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| author | Justin Bedo <cu@cua0.org> | 2018-10-24 16:35:52 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-10-25 07:26:48 +1100 |
| commit | 92b4ea2ddac572f8bd830858132956829d92a734 (patch) | |
| tree | a455e9f8737bcfd437063c1cb0fb498a3e309918 /tools/bwa-mem.nix | |
| parent | 7daac8bb4bd0d705662c18b677a69d3785f4d8f8 (diff) | |
Simplify types for sorting
Diffstat (limited to 'tools/bwa-mem.nix')
| -rw-r--r-- | tools/bwa-mem.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/bwa-mem.nix b/tools/bwa-mem.nix index 3208e48..eed488e 100644 --- a/tools/bwa-mem.nix +++ b/tools/bwa-mem.nix @@ -36,5 +36,5 @@ in stdenv.mkDerivation { ${optionalString bamOutput "| samtools view -b"} \ > $out ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = option-sort.none;} else filetype.sam {ref = ref; sorting = option-sort.none;}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.none {};}; } |