diff options
| author | Justin Bedo <cu@cua0.org> | 2018-11-02 16:11:29 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-11-02 16:11:29 +1100 |
| commit | ceb73223717abfb0de1a0905833b0cbac0b3fa23 (patch) | |
| tree | b7b4da5ff9ff5f70c4c65fa720a5e00dbecc7b98 /tools/bwa-mem.nix | |
| parent | f416c145204765a1566782f0ff384d3f65d6ed35 (diff) | |
Allow bwa-mem to take gzipped fastq inputs
Diffstat (limited to 'tools/bwa-mem.nix')
| -rw-r--r-- | tools/bwa-mem.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/bwa-mem.nix b/tools/bwa-mem.nix index 3420294..2b3bc64 100644 --- a/tools/bwa-mem.nix +++ b/tools/bwa-mem.nix @@ -17,7 +17,7 @@ with bionix.compression; let fa = f: matchFiletype "bwa-ref" { fa = _: f; } f; - fq = f: matchFiletype "bwa-input" { fq = _: f; } f; + fq = f: matchFiletype "bwa-input" { fq = _: f; gz = matchFiletype' "bwa-input" { fq = _: f; }; } f; in stdenv.mkDerivation { name = "bwa-mem"; |