bwa-mem2: init

1 files changed, 6 insertions, 2 deletions

diff --git a/tools/bwa.nix b/tools/bwa.nix
index 58f9651..90a8bd3 100644
--- a/tools/bwa.nix
+++ b/tools/bwa.nix
@@ -3,15 +3,19 @@
 with bionix;
 
 rec {
+  app2 = pkgs.callPackage ./bwa-mem2-app.nix {};
+
   /* Align read against a reference: defaults to bwa-mem */
-  align = bwa-mem;
+  align = bionix.bwa.mem;
 
   /* Align reads against a reference using bwa-mem
   Type: bwa-mem :: {ref :: fasta, bamOutput :: bool, ...} -> {input1, input2} -> bam/sam
   */
-  bwa-mem = callBionixE ./bwa-mem.nix;
+  mem = callBionixE ./bwa-mem.nix;
+  mem2 = callBionixE ./bwa-mem2.nix;
   /* Creates an reference index for BWA
   Type: index :: {...} -> fasta -> BWA index
   */
   index = callBionixE ./bwa-index.nix;
+  index2 = callBionixE ./bwa-index2.nix;
 }