diff options
| author | Justin Bedo <cu@cua0.org> | 2020-07-08 10:55:48 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2020-07-08 10:56:10 +1000 |
| commit | 0035049b0d2fcd973d544c505a92a3796ab5c22e (patch) | |
| tree | 79c04bc56b4a868dd9a49139f45935cdb9263df5 /tools/cnvkit-batch.nix | |
| parent | 21a643bc66c27a5fba8b9a0683a34160ca05acf2 (diff) | |
cnvkit: python 2 -> python 3
Diffstat (limited to 'tools/cnvkit-batch.nix')
| -rw-r--r-- | tools/cnvkit-batch.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/cnvkit-batch.nix b/tools/cnvkit-batch.nix index d6d439d..113e0c9 100644 --- a/tools/cnvkit-batch.nix +++ b/tools/cnvkit-batch.nix @@ -22,7 +22,7 @@ assert (all sorted (normals ++ tumours)); stage { name = "cnvkit"; - buildInputs = with pkgs; [ python2Packages.cnvkit ]; + buildInputs = with pkgs; [ python3Packages.cnvkit ]; outputs = [ "out" ] ++ builtins.genList (x: "out${toString (x + 1)}") (length tumours); buildCommand = '' ln -s ${ref} ref.fa |