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| author | Justin Bedo <cu@cua0.org> | 2019-06-20 08:23:30 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-08-29 09:08:04 +1000 |
| commit | fbe7543726f4321e3cb11c2fa503c27df14ac8fd (patch) | |
| tree | a678a7e24123ab9a34e4f91120fcc0dcf52dea18 /tools/cnvkit-batch.nix | |
| parent | 0df02e2866b910c012afa3bc24ceb7fdf9cdf6d5 (diff) | |
CNVkit: merge into nixpkgs
Diffstat (limited to 'tools/cnvkit-batch.nix')
| -rw-r--r-- | tools/cnvkit-batch.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/cnvkit-batch.nix b/tools/cnvkit-batch.nix index 114b6b9..5160867 100644 --- a/tools/cnvkit-batch.nix +++ b/tools/cnvkit-batch.nix @@ -22,7 +22,7 @@ assert (all sorted (normals ++ tumours)); stage { name = "cnvkit"; - buildInputs = [ cnvkit.app ]; + buildInputs = with pkgs; [ python3Packages.cnvkit ]; buildCommand = '' ln -s ${ref} ref.fa ln -s ${samtools.faidx indexAttrs ref} ref.fa.fai |