Add flagstat and fastqc

1 files changed, 20 insertions, 0 deletions

diff --git a/tools/fastqc-check.nix b/tools/fastqc-check.nix
new file mode 100644
index 0000000..e13ce2a
--- /dev/null
+++ b/tools/fastqc-check.nix
@@ -0,0 +1,20 @@
+{ stdenv
+, lib
+, fastqc
+, flags ? null}:
+
+with lib;
+
+input:
+
+stdenv.mkDerivation {
+  name = "fastqc-check";
+  buildInputs = [ fastqc ];
+  buildCommand = ''
+    mkdir $out
+    fastqc \
+      -o $out \
+      ${optionalString (flags != null) flags} \
+      ${input}
+  '';
+}