diff options
author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
---|---|---|
committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
commit | 2c92dd5c6425c67a18ab07eba7f15c07dbd4614a (patch) | |
tree | 46be9656b500e38bd4aa47066ce8296a127dd5bf /tools/gridss-annotateVariants.nix | |
parent | 886af7beaaa98ac32db88a7453d917409cf11ae8 (diff) | |
parent | 4574deb8e1649eaf63df424585d11645c7cfa7dd (diff) |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/gridss-annotateVariants.nix')
-rw-r--r-- | tools/gridss-annotateVariants.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-annotateVariants.nix b/tools/gridss-annotateVariants.nix index 4f66c6c..33992c4 100644 --- a/tools/gridss-annotateVariants.nix +++ b/tools/gridss-annotateVariants.nix @@ -8,6 +8,7 @@ , softClipsToSplitReadsAttrs ? {} , identifyVariantsAttrs ? {} , flags ? null +, config ? null }: with nixpkgs; @@ -64,6 +65,7 @@ stdenv.mkDerivation rec { INPUT_VCF=input.vcf \ OUTPUT_VCF=out.vcf \ WORKING_DIR=$TMPDIR/ \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ TMP_DIR=$TMPDIR/ mv out.vcf $out |