diff options
| author | Justin Bedo <cu@cua0.org> | 2021-07-28 08:07:32 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2021-07-28 09:17:56 +1000 |
| commit | ed98174bbefc85f9895c870fdb7518e2a534a150 (patch) | |
| tree | 913c1eb5cb384213d22af6cf4f4e2b8fd2a51276 /tools/gridss-assemble.nix | |
| parent | 134f5e0bfcd5f22e3adee4b707e10693cf71e635 (diff) | |
bugfix: use unsorted type for alignment output
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
Diffstat (limited to 'tools/gridss-assemble.nix')
| -rw-r--r-- | tools/gridss-assemble.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 9e51cab..1a46eae 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -70,6 +70,6 @@ stage rec { touch $out cp -r out.gridss.working $work ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.name {}; }; + passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; passthru.multicore = true; } |