diff options
| author | Justin Bedo <cu@cua0.org> | 2020-09-02 14:57:01 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2020-09-02 14:57:01 +1000 |
| commit | f3dc7987e0e841b97fd43160c68f8d09265083bc (patch) | |
| tree | e834d0eaa11ab00f9e18deb150d0511c0482dddb /tools/gridss-assemble.nix | |
| parent | 2cee6ee61240fbbc7f9684208b67eae8634404bf (diff) | |
gridss: add missing flags parameter
Diffstat (limited to 'tools/gridss-assemble.nix')
| -rw-r--r-- | tools/gridss-assemble.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/tools/gridss-assemble.nix b/tools/gridss-assemble.nix index 14f39c8..a532f4b 100644 --- a/tools/gridss-assemble.nix +++ b/tools/gridss-assemble.nix @@ -55,7 +55,8 @@ stage rec { OUTPUT=$out \ ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ WORKING_DIR=$TMPDIR/ \ - TMP_DIR=$TMPDIR/ + TMP_DIR=$TMPDIR/ \ + ${optionalString (flags != null) flags} ''; passthru.filetype = filetype.bam { ref = ref; sorting = sort.name {}; }; passthru.multicore = true; |