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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-29 12:10:45 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-29 12:10:45 +1100 |
| commit | 16951e6f99636a2c9d924d49c549a918e403f276 (patch) | |
| tree | 677033f3d8edecfa238c39fc8d023ec9d1347f02 /tools/gridss-callVariants.nix | |
| parent | dcb23a997359160ffdc58a971027fd77c45c7157 (diff) | |
Correct argument for gridss option file
Diffstat (limited to 'tools/gridss-callVariants.nix')
| -rw-r--r-- | tools/gridss-callVariants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-callVariants.nix b/tools/gridss-callVariants.nix index 76adc74..48f7cb2 100644 --- a/tools/gridss-callVariants.nix +++ b/tools/gridss-callVariants.nix @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { WORKER_THREADS=$NIX_BUILD_CORES \ TMP_DIR=. \ WORKING_DIR=. \ - ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \ + ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ REFERENCE_SEQUENCE="ref.fa" \ ${concatMapStringsSep " " (i: "INPUT=\"${i}\"") inputs} \ OUTPUT="$out/gridss.vcf" \ |