diff options
| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
| commit | 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 (patch) | |
| tree | 65cd429a3ac08b9f04703a7da0bfa76ecebb36ef /tools/gridss-callVariants.nix | |
| parent | 01401aaee74dac39e0502688654ef02771a88cd7 (diff) | |
Fix up gridss config file.
Diffstat (limited to 'tools/gridss-callVariants.nix')
| -rw-r--r-- | tools/gridss-callVariants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-callVariants.nix b/tools/gridss-callVariants.nix index 9afaf65..76adc74 100644 --- a/tools/gridss-callVariants.nix +++ b/tools/gridss-callVariants.nix @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { WORKER_THREADS=$NIX_BUILD_CORES \ TMP_DIR=. \ WORKING_DIR=. \ - ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \ + ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \ REFERENCE_SEQUENCE="ref.fa" \ ${concatMapStringsSep " " (i: "INPUT=\"${i}\"") inputs} \ OUTPUT="$out/gridss.vcf" \ |