diff options
| author | l-d-s <distefano.l@wehi.edu.au> | 2018-12-10 16:42:16 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-12-10 16:42:16 +1100 |
| commit | 6742864b8f92f5d7d56da4901486b7e83a271e23 (patch) | |
| tree | ad9d65650db23fca88b133bb70814f20e4be1cfe /tools/gridss-callVariants.nix | |
| parent | 238c059743605853472d172f430227e06e20b891 (diff) | |
gridss: add java heapSize arguments.
Diffstat (limited to 'tools/gridss-callVariants.nix')
| -rw-r--r-- | tools/gridss-callVariants.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/tools/gridss-callVariants.nix b/tools/gridss-callVariants.nix index 48f7cb2..d55db23 100644 --- a/tools/gridss-callVariants.nix +++ b/tools/gridss-callVariants.nix @@ -5,6 +5,7 @@ , faidxAttrs ? {} , flags ? null , config ? null +, heapSize ? "31g" }: with nixpkgs; @@ -31,7 +32,7 @@ stdenv.mkDerivation rec { ln -s $f done mkdir $out - java -ea -Xmx31g \ + java -ea -Xmx${heapSize} \ -Dreference_fasta="ref.fa" \ -Dsamjdk.create_index=true \ -Dsamjdk.use_async_io_read_samtools=true \ |