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authorJustin Bedo <cu@cua0.org>2019-03-28 13:40:31 +1100
committerJustin Bedo <cu@cua0.org>2019-03-28 13:40:31 +1100
commitdbbfc5655b840e9cd1d10993b411376ec0a90135 (patch)
tree17f3a63cd9ab7c6407eeb6b88ffe0488b9932deb /tools/gridss-callVariants.nix
parent1d01a7faf089bc4ce221a4460abf613dd279e2a7 (diff)
gridss: less chatty logs
Diffstat (limited to 'tools/gridss-callVariants.nix')
-rw-r--r--tools/gridss-callVariants.nix1
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss-callVariants.nix b/tools/gridss-callVariants.nix
index 1ec9206..ffbb349 100644
--- a/tools/gridss-callVariants.nix
+++ b/tools/gridss-callVariants.nix
@@ -39,6 +39,7 @@ stage rec {
-Dsamjdk.use_async_io_write_tribble=true \
-Dgridss.gridss.output_to_temp_file=true \
-cp ${bionix.gridss.jar} gridss.CallVariants \
+ VERBOSITY=WARNING \
WORKER_THREADS=$NIX_BUILD_CORES \
TMP_DIR=. \
WORKING_DIR=. \