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| author | l-d-s <l@sdf.org> | 2018-11-15 16:37:30 +1100 |
|---|---|---|
| committer | l-d-s <l@sdf.org> | 2018-11-15 16:37:30 +1100 |
| commit | 121202685860545b1a0ddc0266452af5eeb83ce0 (patch) | |
| tree | 1c2e2690a905eb0580cc42f02d77529a7c773522 /tools/gridss-collectGridssMetrics.nix | |
| parent | 5ad075658eea3d783bac013aae476dd22a371e71 (diff) | |
Need to test config != null
Diffstat (limited to 'tools/gridss-collectGridssMetrics.nix')
| -rw-r--r-- | tools/gridss-collectGridssMetrics.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-collectGridssMetrics.nix b/tools/gridss-collectGridssMetrics.nix index 86732b8..8f87b6f 100644 --- a/tools/gridss-collectGridssMetrics.nix +++ b/tools/gridss-collectGridssMetrics.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { java -Xmx1G -cp ${bionix.gridss.jar} \ gridss.analysis.CollectGridssMetrics \ ${optionalString sorted "ASSUME_SORTED=true"} \ - ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ + ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \ I=input.bam \ O=$out \ THRESHOLD_COVERAGE=${toString thresholdCoverage} |