diff options
| author | l-d-s <distefano.l@wehi.edu.au> | 2018-12-10 16:42:16 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-12-10 16:42:16 +1100 |
| commit | 6742864b8f92f5d7d56da4901486b7e83a271e23 (patch) | |
| tree | ad9d65650db23fca88b133bb70814f20e4be1cfe /tools/gridss-collectMetrics.nix | |
| parent | 238c059743605853472d172f430227e06e20b891 (diff) | |
gridss: add java heapSize arguments.
Diffstat (limited to 'tools/gridss-collectMetrics.nix')
| -rw-r--r-- | tools/gridss-collectMetrics.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/tools/gridss-collectMetrics.nix b/tools/gridss-collectMetrics.nix index b68aeb1..17e3c46 100644 --- a/tools/gridss-collectMetrics.nix +++ b/tools/gridss-collectMetrics.nix @@ -3,6 +3,7 @@ , thresholdCoverage ? 10000 , flags ? null , config ? null +, heapSize ? "1G" }: with nixpkgs; @@ -21,7 +22,7 @@ stdenv.mkDerivation rec { buildInputs = [ jre R ]; buildCommand = '' mkdir $out - java -Xmx1G -cp ${bionix.gridss.jar} \ + java -Xmx${heapSize} -cp ${bionix.gridss.jar} \ gridss.analysis.CollectGridssMetrics \ ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ I=${input}\ |