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| author | Justin Bedo <cu@cua0.org> | 2019-04-07 21:10:25 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-04-07 21:10:25 +1000 |
| commit | e5a8870358713f4e44e135da913c50230d83d4f1 (patch) | |
| tree | 9678b00f5b683f0d3df31c11ff2c96c0a597cb0f /tools/gridss-collectMetrics.nix | |
| parent | e97bc0b22b9f49d95d6b449b2b20e7222b42622d (diff) | |
modify outputs to ensure determinism
Diffstat (limited to 'tools/gridss-collectMetrics.nix')
| -rw-r--r-- | tools/gridss-collectMetrics.nix | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/tools/gridss-collectMetrics.nix b/tools/gridss-collectMetrics.nix index c62346e..2e3b3a9 100644 --- a/tools/gridss-collectMetrics.nix +++ b/tools/gridss-collectMetrics.nix @@ -29,5 +29,11 @@ stage rec { O=$out/input \ AS=true \ THRESHOLD_COVERAGE=${toString thresholdCoverage} + + # Make the output deterministic by removing timestamps + sed -i '/^# Started on:/d' $out/input.*_metrics + if [ -e $out/input.insert_size_histogram.pdf ] ; then + sed -i 's/(D:[0-9]\+)/(D:19700101000000)/g' $out/input.insert_size_histogram.pdf + fi ''; } |