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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
| commit | 2c92dd5c6425c67a18ab07eba7f15c07dbd4614a (patch) | |
| tree | 46be9656b500e38bd4aa47066ce8296a127dd5bf /tools/gridss-extractSVReads.nix | |
| parent | 886af7beaaa98ac32db88a7453d917409cf11ae8 (diff) | |
| parent | 4574deb8e1649eaf63df424585d11645c7cfa7dd (diff) | |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/gridss-extractSVReads.nix')
| -rw-r--r-- | tools/gridss-extractSVReads.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index a10abf5..e3ed1cc 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -5,6 +5,7 @@ , flags ? null , unmappedReads ? false , minClipLength ? 5 +, config ? null }: with nixpkgs; @@ -35,6 +36,7 @@ stdenv.mkDerivation rec { METRICS_OUTPUT=$out/input.sv_metrics \ INSERT_SIZE_METRICS=$out/input.insert_size_metrics \ UNMAPPED_READS=${if unmappedReads then "true" else "false"} \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ MIN_CLIP_LENGTH=${toString minClipLength} ''; } |