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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-15 17:25:53 +1100 |
| commit | 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 (patch) | |
| tree | 65cd429a3ac08b9f04703a7da0bfa76ecebb36ef /tools/gridss-extractSVReads.nix | |
| parent | 01401aaee74dac39e0502688654ef02771a88cd7 (diff) | |
Fix up gridss config file.
Diffstat (limited to 'tools/gridss-extractSVReads.nix')
| -rw-r--r-- | tools/gridss-extractSVReads.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index b920f5f..54edc85 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { METRICS_OUTPUT=$out/input.sv_metrics \ INSERT_SIZE_METRICS=$out/input.insert_size_metrics \ UNMAPPED_READS=${if unmappedReads then "true" else "false"} \ - ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \ + ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \ MIN_CLIP_LENGTH=${toString minClipLength} ''; } |