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author | Justin Bedo <cu@cua0.org> | 2019-03-28 13:40:31 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2019-03-28 13:40:31 +1100 |
commit | dbbfc5655b840e9cd1d10993b411376ec0a90135 (patch) | |
tree | 17f3a63cd9ab7c6407eeb6b88ffe0488b9932deb /tools/gridss-extractSVReads.nix | |
parent | 1d01a7faf089bc4ce221a4460abf613dd279e2a7 (diff) |
gridss: less chatty logs
Diffstat (limited to 'tools/gridss-extractSVReads.nix')
-rw-r--r-- | tools/gridss-extractSVReads.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index f2fab30..cf9085d 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -32,6 +32,7 @@ stage rec { done java -Dsamjdk.create_index=true \ -cp ${bionix.gridss.jar} gridss.ExtractSVReads \ + VERBOSITY=WARNING \ REFERENCE_SEQUENCE=ref.fa \ I=input.bam \ O=$out \ |