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| author | Justin Bedo <cu@cua0.org> | 2020-09-02 14:57:01 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2020-09-02 14:57:01 +1000 |
| commit | f3dc7987e0e841b97fd43160c68f8d09265083bc (patch) | |
| tree | e834d0eaa11ab00f9e18deb150d0511c0482dddb /tools/gridss-extractSVReads.nix | |
| parent | 2cee6ee61240fbbc7f9684208b67eae8634404bf (diff) | |
gridss: add missing flags parameter
Diffstat (limited to 'tools/gridss-extractSVReads.nix')
| -rw-r--r-- | tools/gridss-extractSVReads.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index cf9085d..6691808 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -38,7 +38,8 @@ stage rec { O=$out \ UNMAPPED_READS=${if unmappedReads then "true" else "false"} \ ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ - MIN_CLIP_LENGTH=${toString minClipLength} + MIN_CLIP_LENGTH=${toString minClipLength} \ + ${optionalString (flags != null) flags} ''; passthru.filetype = input.filetype; } |