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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-13 09:10:23 +1100 |
| commit | 2c92dd5c6425c67a18ab07eba7f15c07dbd4614a (patch) | |
| tree | 46be9656b500e38bd4aa47066ce8296a127dd5bf /tools/gridss-identifyVariants.nix | |
| parent | 886af7beaaa98ac32db88a7453d917409cf11ae8 (diff) | |
| parent | 4574deb8e1649eaf63df424585d11645c7cfa7dd (diff) | |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/gridss-identifyVariants.nix')
| -rw-r--r-- | tools/gridss-identifyVariants.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-identifyVariants.nix b/tools/gridss-identifyVariants.nix index f44771b..16982e2 100644 --- a/tools/gridss-identifyVariants.nix +++ b/tools/gridss-identifyVariants.nix @@ -7,6 +7,7 @@ , collectMetricsAttrs ? {} , softClipsToSplitReadsAttrs ? {} , flags ? null +, config ? null }: with nixpkgs; @@ -60,6 +61,7 @@ stdenv.mkDerivation rec { ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \ ASSEMBLY=${assembly} \ OUTPUT_VCF=out.vcf \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ WORKING_DIR=$TMPDIR/ \ TMP_DIR=$TMPDIR/ |