diff options
| author | l-d-s <l@sdf.org> | 2018-11-15 16:37:30 +1100 |
|---|---|---|
| committer | l-d-s <l@sdf.org> | 2018-11-15 16:37:30 +1100 |
| commit | 121202685860545b1a0ddc0266452af5eeb83ce0 (patch) | |
| tree | 1c2e2690a905eb0580cc42f02d77529a7c773522 /tools/gridss-softClipsToSplitReads.nix | |
| parent | 5ad075658eea3d783bac013aae476dd22a371e71 (diff) | |
Need to test config != null
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 5fce894..c04b039 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { I=${input} \ O=$out \ ${optionalString alignerStreaming "ALIGNER_STREAMING=true"} \ - ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ + ${optionalString (config != null) ("CONFIGURATION_FILE=" + gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES ''; passthru.filetype = filetype.bam { ref = ref; sort = sorting.none {}; } |