diff options
| author | Justin Bedo <cu@cua0.org> | 2018-12-11 14:11:21 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-12-11 14:11:21 +1100 |
| commit | d79fc6785f2b8714fa2762bd07a9a9f937bf4513 (patch) | |
| tree | c9ff02450c40bd27d4a424e572f2928ac5c2ccc7 /tools/gridss-softClipsToSplitReads.nix | |
| parent | 2a8c14c6fabc914b8cc173313a685f2b94a26aea (diff) | |
gridss: fix softClipsToSplitReads after assembly
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 9bce063..c23168f 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -35,5 +35,5 @@ stdenv.mkDerivation rec { ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES ''; - passthru.filetype = filetype.bam { ref = ref; sorting = matchFileSorting "grids-softClipsToSplitReads" { coord = _: input.sorting; name = _: sort.none {}; none = _: input.sorting;} input;}; + passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; } |