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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-12-11 14:17:22 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-12-11 14:17:22 +1100 |
| commit | f0357e09b8c473b55d22c4632692fcc79021570d (patch) | |
| tree | 9c92993d1f0c788a162159e6440ea958eae3e35d /tools/gridss-softClipsToSplitReads.nix | |
| parent | 6742864b8f92f5d7d56da4901486b7e83a271e23 (diff) | |
| parent | 10bdecf6c1338d7f531ddf7b41da14dfe4a4ac33 (diff) | |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 68ea0a5..c5d8062 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -37,5 +37,5 @@ stdenv.mkDerivation rec { ${optionalString (config != null) ("OPTIONS_FILE=" + bionix.gridss.gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES ''; - passthru.filetype = filetype.bam { ref = ref; sorting = matchFileSorting "grids-softClipsToSplitReads" { coord = _: input.sorting; name = _: sort.none {}; none = _: input.sorting;} input;}; + passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; } |