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| author | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:43 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:43 +1000 |
| commit | 92da3257c6867b6f54943e39345ab295703a30c4 (patch) | |
| tree | 2335f6bcf107bea657b21386eaeda194d969c7ec /tools/hisat2-extractExons.nix | |
| parent | 3e037c4d706f5ac02c663a8d7f56703373785d29 (diff) | |
hisat2: init
Diffstat (limited to 'tools/hisat2-extractExons.nix')
| -rw-r--r-- | tools/hisat2-extractExons.nix | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/tools/hisat2-extractExons.nix b/tools/hisat2-extractExons.nix new file mode 100644 index 0000000..5785954 --- /dev/null +++ b/tools/hisat2-extractExons.nix @@ -0,0 +1,17 @@ +{ bionix +, flags ? null +}: + +gtf: + +with bionix; +with lib; +with types; + +stage { + name = "hisat2-extractExons"; + buildInputs = with pkgs; [ hisat2 ]; + buildCommand = '' + hisat2_extract_exons.py ${gtf} > $out + ''; +} |