Wrap inferCNV

Resolves #8

1 files changed, 24 insertions, 0 deletions

diff --git a/tools/infercnv-infer.nix b/tools/infercnv-infer.nix
new file mode 100644
index 0000000..95ebbe3
--- /dev/null
+++ b/tools/infercnv-infer.nix
@@ -0,0 +1,24 @@
+{bionix
+,nixpkgs
+,flags ? null}:
+
+with nixpkgs;
+with lib;
+
+{ref
+,expr
+,pos}:
+
+stdenv.mkDerivation {
+  name = "inferCNV";
+  buildInputs = [ bionix.infercnv.app ];
+  buildCommand = ''
+    inferCNV.R --output_dir $TMPDIR \
+      ${optionalString (flags != null) flags} \
+      --ref ${ref} \
+      ${expr} \
+      ${pos}
+    mkdir $out
+    cp -r $TMPDIR/* $out
+  '';
+}