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| author | Justin Bedo <cu@cua0.org> | 2018-11-02 15:35:22 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-11-02 15:40:27 +1100 |
| commit | f416c145204765a1566782f0ff384d3f65d6ed35 (patch) | |
| tree | 0ce95603001956ac9941f95bd4870aa7a06cce28 /tools/kallisto-index.nix | |
| parent | ec77e9c3a9c2dc7425ee07474f525dd0a3d01fab (diff) | |
kallisto: init
Diffstat (limited to 'tools/kallisto-index.nix')
| -rw-r--r-- | tools/kallisto-index.nix | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tools/kallisto-index.nix b/tools/kallisto-index.nix new file mode 100644 index 0000000..33dfb80 --- /dev/null +++ b/tools/kallisto-index.nix @@ -0,0 +1,22 @@ +{bionix +, nixpkgs +, kmerSize ? 31 +, unique ? false}: + +with nixpkgs; +with lib; +with bionix.types; + +assert (kmerSize > 1); + +input: + +assert (matchFiletype input { fa = _: true; } input); + +stdenv.mkDerivation { + name = "kallisto-index"; + buildInputs = [ kallisto ]; + buildCommand = '' + kallisto index -k ${toString kmerSize} ${optionalString unique "--make-unique"} -i $out ${input} + ''; +} |