refactor, add mosdepth, and fixes for bwa

1 files changed, 15 insertions, 0 deletions

diff --git a/tools/mosdepth-plot.nix b/tools/mosdepth-plot.nix
new file mode 100644
index 0000000..464e495
--- /dev/null
+++ b/tools/mosdepth-plot.nix
@@ -0,0 +1,15 @@
+{ stdenv
+, mosdepth
+, python
+, flags ? null}:
+
+input:
+
+stdenv.mkDerivation {
+  name = "mosdepth-depth";
+  buildInputs = [ python ];
+  buildCommand = ''
+    python ${mosdepth.src}/scripts/plot-dist.py ${input}/*global.dist.txt
+    mv dist.html $out
+  '';
+}