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| author | Justin Bedo <cu@cua0.org> | 2019-04-07 21:10:25 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-04-07 21:10:25 +1000 |
| commit | e5a8870358713f4e44e135da913c50230d83d4f1 (patch) | |
| tree | 9678b00f5b683f0d3df31c11ff2c96c0a597cb0f /tools/platypus-callVariants.nix | |
| parent | e97bc0b22b9f49d95d6b449b2b20e7222b42622d (diff) | |
modify outputs to ensure determinism
Diffstat (limited to 'tools/platypus-callVariants.nix')
| -rw-r--r-- | tools/platypus-callVariants.nix | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index f3b3e7c..abe2a6b 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -35,6 +35,9 @@ stage { ${optionalString (flags != null) flags} \ -o $out \ --bamFiles=${concatMapStringsSep "," (p: "${filename p}.bam") inputs} + + # Remove timestamps from output + sed -i '/^##fileDate/d' $out ''; passthru.filetype = filetype.vcf {ref = ref;}; passthru.multicore = true; |