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| author | Justin Bedo <cu@cua0.org> | 2018-09-20 13:57:12 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-09-20 14:34:36 +1000 |
| commit | 33a121a7bad5b2608cc41ce60ab3d65676541fa6 (patch) | |
| tree | dbbce4154a85988f3bfd9b13d42ad5d37f04e18a /tools/samtools-faidx.nix | |
| parent | f0a8a4de59ea79f56e074ddd16eff0ce1782dfe8 (diff) | |
Wrap some tools and make an example pipeline
Diffstat (limited to 'tools/samtools-faidx.nix')
| -rw-r--r-- | tools/samtools-faidx.nix | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/tools/samtools-faidx.nix b/tools/samtools-faidx.nix new file mode 100644 index 0000000..0dc03ee --- /dev/null +++ b/tools/samtools-faidx.nix @@ -0,0 +1,18 @@ +{ stdenv +, callPackage +, lib +, samtools +, flags ? null +}: + +input: + +with lib; + +stdenv.mkDerivation { + name = "samtools-faidx"; + buildInputs = [ samtools ]; + buildCommand = '' + samtools faidx ${optionalString (flags != null) flags} ${input} > $out + ''; +} |