diff options
| author | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
| commit | c3babc9eb65dc8c56d07ce8a6ee0d8c03bbd223e (patch) | |
| tree | f7d88ec21635664781c7c79fe0ea6f962ae38004 /tools/samtools-faidx.nix | |
| parent | 9fd618d0305d4927c8d86fc37238d1216e401967 (diff) | |
large refactor
- use bionix.pkgs instead of nixpkgs
- replace stdenv.mkDerivation with stage
Diffstat (limited to 'tools/samtools-faidx.nix')
| -rw-r--r-- | tools/samtools-faidx.nix | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/tools/samtools-faidx.nix b/tools/samtools-faidx.nix index 1fde411..45e055b 100644 --- a/tools/samtools-faidx.nix +++ b/tools/samtools-faidx.nix @@ -1,20 +1,19 @@ { bionix -, nixpkgs , flags ? null }: input: -with nixpkgs; +with bionix; with lib; -with bionix.types; +with types; assert (matchFiletype "samtools-faidx" { fa = _: true; } input); -stdenv.mkDerivation { +stage { name = "samtools-faidx"; - buildInputs = [ samtools ]; + buildInputs = with pkgs; [ samtools ]; buildCommand = '' ln -s ${input} input.fasta samtools faidx ${optionalString (flags != null) flags} input.fasta |