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author | Justin Bedo <cu@cua0.org> | 2018-10-29 15:32:38 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2018-10-29 15:32:38 +1100 |
commit | 7f11fb044b6e08c53f53a1a0d0d6519fba1ccce3 (patch) | |
tree | f946a26f67f1503ee330908bbcb776537a3aeb33 /tools/samtools-markdup.nix | |
parent | 3ad53248deca12bda8351f187f322fd9bf6351a1 (diff) |
init: samtools-markdup
Diffstat (limited to 'tools/samtools-markdup.nix')
-rw-r--r-- | tools/samtools-markdup.nix | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tools/samtools-markdup.nix b/tools/samtools-markdup.nix new file mode 100644 index 0000000..73094f2 --- /dev/null +++ b/tools/samtools-markdup.nix @@ -0,0 +1,22 @@ +{ bionix +, nixpkgs +, flags ? null +}: + +input: + +with nixpkgs; +with lib; +with bionix.types; + +assert (matchFiletype "samtools-markdup" { bam = _: true; } input); +assert (matchFileSorting "samtools-markdup" { coord = _: true; } input); + +stdenv.mkDerivation { + name = "samtools-markdup"; + buildInputs = [ samtools ]; + buildCommand = '' + samtools markdup ${optionalString (flags != null) flags} ${input} $out + ''; + passthru.filetype = input.filetype; +} |