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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-22 12:04:23 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-22 12:04:23 +1100 |
| commit | 7c36ee4ec628767c834ad803aac76d93e31f0486 (patch) | |
| tree | 2edf423614fc077c4027b7996f690b004ec4f25b /tools/samtools-sort.nix | |
| parent | 3c568bacd397a3ddcb203811f7fa5a1f8af760a3 (diff) | |
| parent | 0ade062d2da8a7111b14aa3d72ef7c741e98352d (diff) | |
Merge branch 'master' of https://github.com/PapenfussLab/bionix
Diffstat (limited to 'tools/samtools-sort.nix')
| -rw-r--r-- | tools/samtools-sort.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix index 5a02dab..e77f3db 100644 --- a/tools/samtools-sort.nix +++ b/tools/samtools-sort.nix @@ -19,7 +19,7 @@ assert (matchFiletype "samtools-sort" { bam = _: true; sam = _: true; cram = _: let outfmtR = if outfmt != null then outfmt input else input.filetype; outFmtFlags = matchFiletype "samtools-sort-outfmt" { bam = _: "-O BAM"; sam = _: "-O SAM"; cram = ref: "-O CRAM -T ${ref}"; } {filetype = outfmtR;}; - alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; } input; + alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; none = _: false;} input; in stdenv.mkDerivation { name = "samtools-sort"; buildInputs = [ samtools ]; |