diff options
| author | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
| commit | c3babc9eb65dc8c56d07ce8a6ee0d8c03bbd223e (patch) | |
| tree | f7d88ec21635664781c7c79fe0ea6f962ae38004 /tools/snpeff-dbnsfp.nix | |
| parent | 9fd618d0305d4927c8d86fc37238d1216e401967 (diff) | |
large refactor
- use bionix.pkgs instead of nixpkgs
- replace stdenv.mkDerivation with stage
Diffstat (limited to 'tools/snpeff-dbnsfp.nix')
| -rw-r--r-- | tools/snpeff-dbnsfp.nix | 7 |
1 files changed, 3 insertions, 4 deletions
diff --git a/tools/snpeff-dbnsfp.nix b/tools/snpeff-dbnsfp.nix index f9fbdaa..5e7c91a 100644 --- a/tools/snpeff-dbnsfp.nix +++ b/tools/snpeff-dbnsfp.nix @@ -1,16 +1,15 @@ {bionix -,nixpkgs ,dbnsfp ,flags ? ""}: input: -with nixpkgs; -with bionix.types; +with bionix; +with types; assert (matchFiletype "snpeff-dbnsfp" { vcf = _: true; } input); -stdenv.mkDerivation { +stage { name = "snpeff-dbnsfp"; buildCommand = '' ln -s ${dbnsfp.db} dbNSFP.txt.gz |