diff options
| author | lezhou8 <lezhou@protonmail.com> | 2023-01-30 12:37:39 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2023-02-27 13:45:10 +1100 |
| commit | 4ef81f5f631f5766287d3bbcb6bd1238259f0523 (patch) | |
| tree | 08ab0da6d816705c36f36503286c243d40016828 /tools | |
| parent | 288124450ddf2c7843e9041a2d36bcdb6ba7154a (diff) | |
platypus.callVariants: strip platypus options from VCF output
The detailed options embedded into the VCF reduces determinism, as it
includes extranous details such as number of cores.
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/platypus-callVariants.nix | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index 59a224b..3119006 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -37,6 +37,9 @@ stage { # Remove timestamps from output sed -i '/^##fileDate/d' $out + + # Remove platypusOptions from output + sed -i '/^##platypusOptions/d' $out ''; passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; |