diff options
| author | Justin Bedo <cu@cua0.org> | 2019-09-06 10:59:25 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-09-06 10:59:46 +1000 |
| commit | 8110c2ce6ab558de28c051c0a3eaccdcb97a82db (patch) | |
| tree | 01d60c830ffa9d258a36f3667afb02990c4f4330 /tools | |
| parent | 84d273e9ab9c02b3da3c4ec53f7e5bcb6f780030 (diff) | |
cnvkit: use python2
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/cnvkit-batch.nix | 2 | ||||
| -rw-r--r-- | tools/cnvkit-scatter.nix | 2 |
2 files changed, 2 insertions, 2 deletions
diff --git a/tools/cnvkit-batch.nix b/tools/cnvkit-batch.nix index 113e0c9..d6d439d 100644 --- a/tools/cnvkit-batch.nix +++ b/tools/cnvkit-batch.nix @@ -22,7 +22,7 @@ assert (all sorted (normals ++ tumours)); stage { name = "cnvkit"; - buildInputs = with pkgs; [ python3Packages.cnvkit ]; + buildInputs = with pkgs; [ python2Packages.cnvkit ]; outputs = [ "out" ] ++ builtins.genList (x: "out${toString (x + 1)}") (length tumours); buildCommand = '' ln -s ${ref} ref.fa diff --git a/tools/cnvkit-scatter.nix b/tools/cnvkit-scatter.nix index 2899584..fb7329f 100644 --- a/tools/cnvkit-scatter.nix +++ b/tools/cnvkit-scatter.nix @@ -9,7 +9,7 @@ with types; stage { name = "cnvkit-scatter"; - buildInputs = with pkgs; [ pkgs.python3Packages.cnvkit ]; + buildInputs = with pkgs; [ pkgs.python2Packages.cnvkit ]; buildCommand = '' cnvkit.py scatter -s ${input}/*.cn{s,r} -o plot.pdf cp plot.pdf $out |