diff options
| -rw-r--r-- | tools/gridss-variants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-variants.nix b/tools/gridss-variants.nix index a838da6..87c2877 100644 --- a/tools/gridss-variants.nix +++ b/tools/gridss-variants.nix @@ -90,7 +90,7 @@ rec { name = "gridss-annotateVariants"; buildInputs = [ jre ]; buildCommand = mkLinks + '' - ln -s ${identify} input.vcf + ln -s ${bionix.gridss.identifyVariants {inherit bwaIndexAttrs faidxAttrs indexAttrs assemblyAttrs collectMetricsAttrs softClipsToSplitReadsAttrs flags config; } inputs} input.vcf java -Xmx4g -Dsamjdk.create_index=true \ -cp ${jar} gridss.AnnotateVariants \ REFERENCE_SEQUENCE=ref.fa \ |