diff options
| -rw-r--r-- | tools/bwa-index.nix | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix index b5e3779..3329221 100644 --- a/tools/bwa-index.nix +++ b/tools/bwa-index.nix @@ -1,6 +1,7 @@ { stdenv , lib , bwa +, flags ? null }: ref: @@ -12,7 +13,7 @@ stdenv.mkDerivation { buildInputs = [ bwa ]; buildCommand = '' ln -s ${ref} ref.fa - bwa index ref.fa + bwa index ${optionalString (flags != null) flags} ref.fa mkdir $out mv ref.fa.* $out grep '^>[^ \t]*_alt$' ref.fa | tr -d '^>' > $out/idxbase.alt || true |