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| -rw-r--r-- | slides.tex | 21 | ||||
| -rw-r--r-- | wehi.pdf | bin | 0 -> 320241 bytes |
2 files changed, 16 insertions, 5 deletions
@@ -151,12 +151,13 @@ \frametitle{What is BioNix?} \begin{enumerate} \item Thin wrapper on Nix - \item Models \emph{stages}\footnote{the execution of one or more executables on one or more input files, producing one or more output files.} as functions (\texttt{config → inputs → drv}) + \item Models \emph{stages}\footnote{the execution of one or more executables on one or more input files, producing one or more output files.} as functions (\Verb|config → inputs → drv|) \item Library of bioinformatics tools (BWA, samtools, etc) organised into a tree, e.g., \begin{itemize} \item \Verb|bionix.bwa.align| \item \Verb|bionix.samtools.sort| \end{itemize} + \item Functions for HPC execution \end{enumerate} \end{frame} @@ -183,12 +184,16 @@ \begin{frame} \frametitle{HPC execution} \begin{minipage}{.3\textwidth} - \includegraphics[width=\linewidth]{slurm} + \begin{overprint} + \onslide<1>\includegraphics[width=\linewidth]{slurm} + \onslide<2>\includegraphics[width=\linewidth]{cluster} + \end{overprint} \end{minipage} \begin{minipage}{.68\textwidth} \begin{enumerate} \item Easy implementation due to derivation overloading pattern from Nix \item Call \Verb|(bionix.slurm \{ ... \}).samtools.sort| instead of \Verb|bionix.samtools.sort| + \onslide<2>\item Easy to shift previous example to HPC execution \end{enumerate} \end{minipage} \end{frame} @@ -206,13 +211,13 @@ \begin{frame} \frametitle{Acknowledgements} - \begin{minipage}{0.32\linewidth} + \begin{minipage}{0.28\linewidth} \begin{itemize} \item Leon Di Stefano \item Tony Papenfuss \end{itemize} \end{minipage} - \begin{minipage}{0.32\linewidth} + \begin{minipage}{0.30\linewidth} \begin{block}{Papenfuss Lab} \begin{itemize} \item Alan Rubin @@ -221,10 +226,16 @@ \end{itemize} \end{block} \end{minipage} - \begin{minipage}{0.32\linewidth} + \begin{minipage}{0.4\linewidth} \begin{block}{Stafford Fox Rare Cancer Team} \end{block} + \begin{block}{Stafford Fox Medical Research Foundation} + \end{block} \end{minipage} + \vspace{1cm} + \begin{center} + \includegraphics[height=1cm]{wehi} + \end{center} \end{frame} \end{document} diff --git a/wehi.pdf b/wehi.pdf Binary files differnew file mode 100644 index 0000000..7f5409d --- /dev/null +++ b/wehi.pdf |