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Diffstat (limited to 'default.nix')
-rw-r--r-- | default.nix | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/default.nix b/default.nix index 604badb..608fa9b 100644 --- a/default.nix +++ b/default.nix @@ -34,6 +34,11 @@ let strelka = callBionix ./tools/strelka.nix {}; ascat = callBionix ./tools/ascat.nix {}; + sbatch = attrs: bionix.extend (self: super: with self; rec { + sbatchDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; } // attrs; + sbatch = attrs: (callPackage ./lib/sbatch.nix {}) (sbatchDefs // attrs); + exec = f: x: y: sbatch (builtins.intersectAttrs sbatchDefs x) (f (builtins.removeAttrs x (builtins.attrNames sbatchDefs)) y); + }); qsub = attrs: bionix.extend (self: super: with self; rec { qsubDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; tmpDir = "/tmp"; sleepTime = 60; queue = null; qsubFlags = null; } // attrs; qsub = attrs: (callPackage ./lib/qsub.nix {}) (qsubDefs // attrs); |