aboutsummaryrefslogtreecommitdiff
path: root/examples/tnpair
diff options
context:
space:
mode:
Diffstat (limited to 'examples/tnpair')
-rwxr-xr-xexamples/tnpair58
1 files changed, 58 insertions, 0 deletions
diff --git a/examples/tnpair b/examples/tnpair
new file mode 100755
index 0000000..5b84d5c
--- /dev/null
+++ b/examples/tnpair
@@ -0,0 +1,58 @@
+#!/bin/sh
+
+set -e
+
+if [[ $# -ne 5 ]] ; then
+ echo "Usage: $0 ref normal1 normal2 tumour1 tumour2"
+ exit 1
+fi
+
+function cleanup {
+ if [[ -e tnpair-$$ ]]; then
+ rm tnpair-$$
+ fi
+}
+trap cleanup INT TERM EXIT
+
+ref=`readlink -f $1`
+norm1=`readlink -f $2`
+norm2=`readlink -f $3`
+tumour1=`readlink -f $4`
+tumour2=`readlink -f $5`
+
+refhash=`nix-hash --base32 --type sha256 --flat $ref`
+norm1hash=`nix-hash --base32 --type sha256 --flat $norm1`
+norm2hash=`nix-hash --base32 --type sha256 --flat $norm2`
+tumour1hash=`nix-hash --base32 --type sha256 --flat $tumour1`
+tumour2hash=`nix-hash --base32 --type sha256 --flat $tumour2`
+
+cat > tnpair-$$ <<EOF
+import ./tnpair.nix {
+ normal = {
+ input1={
+ url="file://$norm1";
+ sha256="$norm1hash";
+ };
+ input2={
+ url="file://$norm2";
+ sha256="$norm2hash";
+ };
+ };
+ tumour = {
+ input1={
+ url = "file://$tumour1";
+ sha256 = "$tumour1hash";
+ };
+ input2={
+ url = "file://$tumour2";
+ sha256 = "$tumour2hash";
+ };
+ };
+ ref = {
+ url = "file://$ref";
+ sha256 = "$refhash";
+ };
+}
+EOF
+
+nix build --keep-going "(import ./tnpair-$$)"