diff options
Diffstat (limited to 'examples/tnpair')
-rwxr-xr-x | examples/tnpair | 58 |
1 files changed, 0 insertions, 58 deletions
diff --git a/examples/tnpair b/examples/tnpair deleted file mode 100755 index 5b84d5c..0000000 --- a/examples/tnpair +++ /dev/null @@ -1,58 +0,0 @@ -#!/bin/sh - -set -e - -if [[ $# -ne 5 ]] ; then - echo "Usage: $0 ref normal1 normal2 tumour1 tumour2" - exit 1 -fi - -function cleanup { - if [[ -e tnpair-$$ ]]; then - rm tnpair-$$ - fi -} -trap cleanup INT TERM EXIT - -ref=`readlink -f $1` -norm1=`readlink -f $2` -norm2=`readlink -f $3` -tumour1=`readlink -f $4` -tumour2=`readlink -f $5` - -refhash=`nix-hash --base32 --type sha256 --flat $ref` -norm1hash=`nix-hash --base32 --type sha256 --flat $norm1` -norm2hash=`nix-hash --base32 --type sha256 --flat $norm2` -tumour1hash=`nix-hash --base32 --type sha256 --flat $tumour1` -tumour2hash=`nix-hash --base32 --type sha256 --flat $tumour2` - -cat > tnpair-$$ <<EOF -import ./tnpair.nix { - normal = { - input1={ - url="file://$norm1"; - sha256="$norm1hash"; - }; - input2={ - url="file://$norm2"; - sha256="$norm2hash"; - }; - }; - tumour = { - input1={ - url = "file://$tumour1"; - sha256 = "$tumour1hash"; - }; - input2={ - url = "file://$tumour2"; - sha256 = "$tumour2hash"; - }; - }; - ref = { - url = "file://$ref"; - sha256 = "$refhash"; - }; -} -EOF - -nix build --keep-going "(import ./tnpair-$$)" |