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Diffstat (limited to 'slides.tex')
-rw-r--r-- | slides.tex | 30 |
1 files changed, 30 insertions, 0 deletions
@@ -3,6 +3,10 @@ \usepackage{microtype} \usepackage{tikz} \usetikzlibrary{fit} +\usepackage[style=verbose-ibid,url=false,natbib=true]{biblatex} +\addbibresource{references.bib} +\renewcommand*{\footnotesize}{\Tiny} +\setlength{\footnotesep}{3pt} \definecolor{bngreen}{HTML}{3c8e64} \definecolor{bnorange}{HTML}{e08919} @@ -25,6 +29,32 @@ } \begin{frame} + \frametitle{Core problems} + \begin{enumerate} + \item \emph{Managing software versions and dependencies}. + \begin{itemize} + \item Conda + \item BioConda~\autocite{Grning2018} + \item apt-get + \end{itemize} + + \item \emph{Managing computational environments}. + \begin{itemize} + \item Docker + \item Singularity + \item \emph{virtual machines} + \end{itemize} + + \item \emph{Managing workflows}. + \begin{itemize} + \item Toil~\autocite{toil} + \item SnakeMake~\autocite{Koster2012} + \item NextFlow~\autocite{di_tommaso_nextflow_2017} + \end{itemize} + \end{enumerate} +\end{frame} + +\begin{frame} \begin{center} \begin{tikzpicture}[->,>=stealth,shorten >=1pt,auto,node distance=2cm,thick] \node (a) {align}; |