1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 70fb5c8..7cc5453 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -64,6 +64,7 @@ let
   };
 
   testNaming = linkOutputs {
+    crai = samtools.index {} (samtools.view { outfmt = types.toCram; } tnpairResult.alignments.tumour);
     kallisto = kallisto.quant {inherit ref;} (attrValues tnpair.tumour.files);
     facets = facets.callCNV {} {vcf = tnpairResult.platypusVars; bams = with tnpairResult.alignments; [ normal tumour ];};
     cnvkit = cnvkitResults.cnvs;