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-rw-r--r--test-tnpair.nix1
1 files changed, 0 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index e7d5d17..679cc67 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -82,7 +82,6 @@ let
"strelka.snvs.vcf" = tnpairResult.variants.snvs;
"strelka.gl.vcf" = tnpairResult.glvariants;
delly = delly.call { } (with tnpairResult.alignments; [ normal tumour ]);
- lumpy = lumpy.call { } (with tnpairResult.alignments; [ normal tumour ]);
manta = manta.call { } (with tnpairResult.alignments; { normals = [ normal tumour ]; });
mantaTN = manta.call { } (with tnpairResult.alignments; { normals = [ normal ]; inherit tumour; });
mantaT = manta.call { } (with tnpairResult.alignments; { inherit tumour; });