diff options
Diffstat (limited to 'tools/bwa-index.nix')
| -rw-r--r-- | tools/bwa-index.nix | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix index 48a2556..c879bc4 100644 --- a/tools/bwa-index.nix +++ b/tools/bwa-index.nix @@ -7,12 +7,15 @@ ref: with nixpkgs; with lib; +with bionix.types; + +assert (matchFiletype "bwa-index" { fa = _: true; } ref); stdenv.mkDerivation { name = "bwa-index"; buildInputs = [ bwa ]; buildCommand = '' - ln -s ${ref.seq} ref.fa + ln -s ${ref} ref.fa bwa index ${optionalString (flags != null) flags} ref.fa mkdir $out mv ref.fa.* $out |