diff options
Diffstat (limited to 'tools/bwa-index.nix')
| -rw-r--r-- | tools/bwa-index.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix index 8ca0eec..b5e3779 100644 --- a/tools/bwa-index.nix +++ b/tools/bwa-index.nix @@ -15,5 +15,6 @@ stdenv.mkDerivation { bwa index ref.fa mkdir $out mv ref.fa.* $out + grep '^>[^ \t]*_alt$' ref.fa | tr -d '^>' > $out/idxbase.alt || true ''; } |