diff options
Diffstat (limited to 'tools/bwa-mem2.nix')
| -rw-r--r-- | tools/bwa-mem2.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/bwa-mem2.nix b/tools/bwa-mem2.nix index 3de1944..b16b7ea 100644 --- a/tools/bwa-mem2.nix +++ b/tools/bwa-mem2.nix @@ -35,6 +35,6 @@ in stage { ${optionalString bamOutput "| samtools view -b"} \ > $out ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.name {};} else filetype.sam {ref = ref; sorting = sort.name {};}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.name {};}; passthru.multicore = true; } |