diff options
Diffstat (limited to 'tools/bwa.nix')
| -rw-r--r-- | tools/bwa.nix | 13 |
1 files changed, 11 insertions, 2 deletions
diff --git a/tools/bwa.nix b/tools/bwa.nix index d0ab5ee..03735d1 100644 --- a/tools/bwa.nix +++ b/tools/bwa.nix @@ -2,7 +2,16 @@ with bionix; -{ - align = callBionixE ./bwa-mem.nix; +rec { + /* Align read against a reference: defaults to bwa-mem */ + align = bwa-mem; + + /* Align reads against a reference using bwa-mem + Type: bwa-mem :: {ref = fasta, bamOutput = bool, ...} -> {input1, input2} -> bam/sam + */ + bwa-mem = callBionixE ./bwa-mem.nix; + /* Creates an reference index for BWA + Type: {...} -> fasta -> BWA index + */ index = callBionixE ./bwa-index.nix; } |