diff options
Diffstat (limited to 'tools/compression.nix')
-rw-r--r-- | tools/compression.nix | 75 |
1 files changed, 42 insertions, 33 deletions
diff --git a/tools/compression.nix b/tools/compression.nix index bfcc292..c9c8777 100644 --- a/tools/compression.nix +++ b/tools/compression.nix @@ -1,4 +1,4 @@ -{bionix}: +{ bionix }: with bionix; with types; @@ -8,42 +8,51 @@ let gunzip = callBionixE ./compression-gunzip.nix; bunzip2 = callBionixE ./compression-bunzip2.nix; -in { - uncompress = attrs: f: matchFiletype "uncompress" { - fa = _: f; - fq = _: f; - bam = _: f; - sam = _: f; - cram = _: f; - vcf = _: f; - bed = _: f; - gz = _: gunzip attrs f; - bz2 = _: bunzip2 attrs f; - } f; +in +{ + uncompress = attrs: f: matchFiletype "uncompress" + { + fa = _: f; + fq = _: f; + bam = _: f; + sam = _: f; + cram = _: f; + vcf = _: f; + bed = _: f; + gz = _: gunzip attrs f; + bz2 = _: bunzip2 attrs f; + } + f; gzip = attrs: f: let gz = gzip attrs f; - in types.matchFiletype "compressed" { - fa = _: gz; - fq = _: gz; - bam = _: gz; - sam = _: gz; - cram = _: gz; - vcf = _: gz; - bed = _: gz; - gz = x: x; - } f; + in + types.matchFiletype "compressed" + { + fa = _: gz; + fq = _: gz; + bam = _: gz; + sam = _: gz; + cram = _: gz; + vcf = _: gz; + bed = _: gz; + gz = x: x; + } + f; bzip2 = attrs: f: let bz2 = bzip2 attrs f; - in types.matchFiletype "compressed" { - fa = _: gz; - fq = _: gz; - bam = _: gz; - sam = _: gz; - cram = _: gz; - vcf = _: gz; - bed = _: gz; - bz2 = x: x; - } f; + in + types.matchFiletype "compressed" + { + fa = _: gz; + fq = _: gz; + bam = _: gz; + sam = _: gz; + cram = _: gz; + vcf = _: gz; + bed = _: gz; + bz2 = x: x; + } + f; } |